Basic Information | |
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Taxon OID | 3300009504 Open in IMG/M |
Scaffold ID | Ga0114946_10027983 Open in IMG/M |
Source Dataset Name | Lake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep Sediment |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3325 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Hawthorne, Nevada | |||||||
Coordinates | Lat. (o) | 38.7 | Long. (o) | -118.7 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001120 | Metagenome / Metatranscriptome | 772 | Y |
F001165 | Metagenome / Metatranscriptome | 760 | Y |
F055681 | Metagenome / Metatranscriptome | 138 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114946_100279832 | F001165 | N/A | MDNSLKPHIPDSIDSQKLQYMQLTANMKATADRLGIGFIGGFVSADGEKFVMTNMDEEDSQALLPDQLK* |
Ga0114946_100279834 | F001120 | N/A | MTKRSPINFDKTVAGFNLTERGIQSFSKSFKLGPLRFTLNAKPSGIRTSIGVPGTGISKRNIKLF* |
Ga0114946_100279837 | F055681 | GGAG | MIGINIEFKRWYLVIRGPKGRVYSAFGFAKQMPVFLSTHTTTLDQYLADRDDEIVFTTSDGEELLRI* |
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