Scaffold Ga0114946_10030484

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114946_10030484

Scaffold Ga0114946_10030484

Overview

Basic Information
Taxon OID	3300009504 Open in IMG/M
Scaffold ID	Ga0114946_10030484 Open in IMG/M
Source Dataset Name	Lake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep Sediment
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3169
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	USA: Hawthorne, Nevada
Coordinates	Lat. (^o)	38.7	Long. (^o)	-118.7	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026883	Metagenome / Metatranscriptome	196	Y
F087244	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114946_100304841	F087244	N/A	MPLPHYTNISNVGSPGGPGTLPDEVVHLNLFEITFILPVILQAQGRDPILLLENATKAPIGGTNLTAFDVGNAQQRFKYSTREFLTTPTKTSGEITIPFQVNVNQQGSMETWTTMKAWYDLLFNSQNGSLHYKSDMIGTLIVNQHDKKGVILRRVTYQNCQLQTLDGWDLDWSSNAIVQEINAKFVYDYFIDEYIDQNFTINPPLVSGY*
Ga0114946_100304843	F026883	N/A	MPLKHILKNKLLFQKHFNLQEWSIDNWPFWMFEENIKLINEIIEEEDNKSKKQEEAQQKQMGGFDPSSAMKNATSGLGNFKMPKF*

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