NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114946_10039526

Scaffold Ga0114946_10039526


Overview

Basic Information
Taxon OID3300009504 Open in IMG/M
Scaffold IDGa0114946_10039526 Open in IMG/M
Source Dataset NameLake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep Sediment
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2737
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: Hawthorne, Nevada
CoordinatesLat. (o)38.7Long. (o)-118.7Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060598Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0114946_100395263F060598AGGMRRISLDGHNLPRYTHIVDLVKGKIGNTGRILKAEELVLAYDLDAHRWLAVRAYQGTKKLSQGVVEIVQEVLKHRGDLVGLLRIFLDKGGYSGSIFHTLAAEARVRFYTPAVRYSTNIAQWEHLQDTDFDATPFIFDKHAALPIDQRPAYRLADTEMQINVREGHKVVDTVSLRAIVLQDPQGQKPAERWPVALLTDDRDSAARTLLNEYGDHWGQEFAHRIGKHDLCLDILPPGYVLKTRRDAQGQLIREVEDNDTAFFLSAWLRCLVFNLMPHFAQALGGAYTTLWAGTLLRKFIRRPATLYLVGKELHVVFDPFPDQDELQPLLDKLNARRTALPWLNNLVVQFHSAQNAPLHPLTAPEKRKRLFGDG*
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