NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115564_10075347

Scaffold Ga0115564_10075347


Overview

Basic Information
Taxon OID3300009505 Open in IMG/M
Scaffold IDGa0115564_10075347 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110523
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1933
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002542Metagenome / Metatranscriptome550Y
F079362Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0115564_100753472F002542GGAMHPSYLGFQVDWPVFIKIPLSANNKSWKQGEHFNWLEQGLAQDKVATLYASGYIYHNPALEVQAKVGDRLSELAGKQLETLVNLLNVEVKNRTSSTSEFETKKCKKSKIDDKQRGLIRRFLNNNRWIAEDFYVIRDKVIDK*
Ga0115564_100753474F079362GGAGMSFRPFDLLNLVRKFGESLTLNKVTTEGSYNPVTGVVDGSTTTDYTVLGYFYNYDTLSVDQVRKGTRKCVISAVAGVQPDEDDKLVGNGDTVVITSVTTIFSNGAAICYICHVEE*
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