Scaffold Ga0118657_10001248

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0118657_10001248

Scaffold Ga0118657_10001248

Overview

Basic Information
Taxon OID	3300009506 Open in IMG/M
Scaffold ID	Ga0118657_10001248 Open in IMG/M
Source Dataset Name	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Novogene
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	42828
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (74.47%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment → Mangrove Sediment Microbial Communities From Mai Po Nature Reserve Marshes In Hong Kong, China

Source Dataset Sampling Location
Location Name	Mai Po Nature Reserve Marshes in Hong Kong
Coordinates	Lat. (^o)	22.498889	Long. (^o)	114.045833	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F091204	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118657_1000124845	F091204	N/A	VLIKKLLKKRALPSGWLRRIRGSRHHFKMSATVIEFPGVRESGSNPTHNAKSALFSDGNMAPLTDFEIAAIESLSSTFQVGGTEAFNFAAKRQLFILASLIKRVLGEDRLNELLAAAEWV

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