NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0115572_10013997

Scaffold Ga0115572_10013997


Overview

Basic Information
Taxon OID3300009507 Open in IMG/M
Scaffold IDGa0115572_10013997 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120607
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5763
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F037230Metagenome / Metatranscriptome168Y
F045851Metagenome / Metatranscriptome152Y
F046001Metagenome / Metatranscriptome152N
F056896Metagenome / Metatranscriptome137N
F072257Metagenome / Metatranscriptome121Y
F092077Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0115572_1001399710F037230N/AMKNLTEEYVEIDWTGICSDFDLDHGDITPEQSFEMDRALGNINEVLHKFIEQNKSEVHLGQATLTNTEYNVLMVSLDHMYEHLDDMRGDFDGDEDNEIDNLKRIADVRSLQKLFKK*
Ga0115572_1001399713F092077N/AMKELSPLQRSFERINELMPDNKDVLLRCSLYEMCFELTNQSFAEGINTKY*
Ga0115572_1001399714F072257N/AMQELDKVVHQWCDSNDRWMYIEYDRDGKVMGLNFMQGDEYECFKKSWCVSDRGLTDFYKQMLYTFAYEQRTTSEHQFINKCMWAYHSAISSRDEYAEEKTTHDYLKMCRQKTTTIR*
Ga0115572_1001399715F005129N/AMKYKVKIAEVNKSTNLMHHSYIDLGIFTVNATTHSFLFPAVKTDWGADINDTELEFHVNNKRCKYVGFKELYTQLYGNSFVTWEADIIQQIEEEVAKQIVKEYPGTNVNY*
Ga0115572_100139972F046001N/AMTKIQFNTNYKTINQITNSNKLNRPVHIMSDGLYVDNSDLETVGKILDRELIKYKLK*
Ga0115572_100139973F045851N/AMTLQDHNTINELIKFYQKNRNESDYKKGIQPIDGHKIDKLMMSNHLMGAKLDLNIY*
Ga0115572_100139979F056896N/AMWSNCCGAEASYLSDELCGDCLEHAVFDDEDEDMGDTCRNGKEWNKCKCC*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.