NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115572_10078622

Scaffold Ga0115572_10078622


Overview

Basic Information
Taxon OID3300009507 Open in IMG/M
Scaffold IDGa0115572_10078622 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120607
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2013
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009856Metagenome / Metatranscriptome312Y
F048232Metagenome148N

Sequences

Protein IDFamilyRBSSequence
Ga0115572_100786224F009856N/AMKYWFDTDDAQRWGLPAAAVLAHLKYWIERNTSAGEEPCMTQGIKEMAEYLPFLTPSKIKRALVKLEEVEAIYRKPNGFDRRHTYCLGTIPDHAWDETEPSISQNRTIDGPNLARVHIETNTSKRTKKDAREELEYQRPTEEEVIGYMEDRGAHDLAPTLGPEFWNYYEANGWMVNGTPIAKWKPKVNQWINRERKNQSNDRRKGFNPAGFTPDGLKDFIANG*
Ga0115572_100786225F048232GAGMDGRITSWMEKPLPYEERVARIMFLREHRRNLLRDYCDETMPKREKNKLRLEIAKVQKALKKLDPDGMFPP*
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