NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115567_10077368

Scaffold Ga0115567_10077368


Overview

Basic Information
Taxon OID3300009508 Open in IMG/M
Scaffold IDGa0115567_10077368 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120412
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2384
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080815Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0115567_100773681F080815N/AECLGHFFHFWHLITVAKSLNVPVFSVESLLLSNSRDEALIVLKASGACTSLSIGSAEMCEAFVDNLREMQSVPTWMHVNVTEIFKDASSFSSVSLMLDREKKYYEHTKCAPVLSTLTSWCRDNIKNCATVSDVYSGATVGTTLDYLSPLKQGGVTNIDEIFNRTFSPRGLLLPGGEEKRTTEAKRLQDSVVYAAVIMGAFFTLAGLVRFFRSRKSLEVVQVI*
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Institute for Fundamental Biomedical Research
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