NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116230_10001415

Scaffold Ga0116230_10001415


Overview

Basic Information
Taxon OID3300009510 Open in IMG/M
Scaffold IDGa0116230_10001415 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22737
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (26.09%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001145Metagenome / Metatranscriptome765Y
F001219Metagenome / Metatranscriptome744Y

Sequences

Protein IDFamilyRBSSequence
Ga0116230_100014156F001145N/AMTLEFFSLVLNHEEAFIEFNTNILETNLINILLLIGLLLYANKVSFSSNLESRQKEILQTIENVQKDVLNASNYYYNAEKGFTQSFFWLQSWKLLYENEKIEVVNLKYNIVKNGIYEIFSTTENLIKNFEKKAFLSLQRYLILVTASKILRKFFFLSEKEQSKILETTISKLGGFKK*
Ga0116230_100014157F001219GAGMKLLILITMTLINTFFLTENGLFDFDLTFPAEAFLFFLFSLVVTFSFLSPISKQLDERSEFINYTLRKSTILLTFGYEKLCKCVEILTEESNELNRQLKITRNYTNSKFDEEISFVQKENLRILSKLKGDLSVKSAYLFSNITNELNLLTDTFFKKKFQ*
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