NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116128_1009156

Scaffold Ga0116128_1009156


Overview

Basic Information
Taxon OID3300009518 Open in IMG/M
Scaffold IDGa0116128_1009156 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3587
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1.5 to 1.75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007478Metagenome / Metatranscriptome350Y
F052336Metagenome / Metatranscriptome142Y
F087101Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0116128_10091561F007478GAGMIRLPILKDELAFLEKLLPDLETRPDLGHLAIEIKKRIDKIRQDIRALQENK*
Ga0116128_10091566F052336N/AMKRLAGALLIPAVLAERLAGLADRQIGQLLLDEVWPCLSPLHPESVLCLHAVDRLRGSPKEKCPACPKCGNEMLLRYGIDEPDFYECVRLSCGHRKPA*
Ga0116128_10091567F087101N/AVRQTTVHTQKQVPLKVKGEAVKYLSSLPQFHGIPDESLVWLAERRTGLNVPDRWVAIALIIGNRVPIPVPMPDGRPQGKPSEATTPAKLEVINGGRIAR*
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