NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116108_1003899

Scaffold Ga0116108_1003899


Overview

Basic Information
Taxon OID3300009519 Open in IMG/M
Scaffold IDGa0116108_1003899 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6789
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1.5 to 1.75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003942Metagenome460N
F004301Metagenome / Metatranscriptome444Y

Sequences

Protein IDFamilyRBSSequence
Ga0116108_10038993F004301GGAMAIAHKPAQLRDSMTAMQFSLFQAQPIAATVDTEPSINARNAKRQLDTLRSQLATAQADLEDVNYNLSIVTMHQQASGEGKIDANWWDAAMRFGMLDLDEEPAYRLGSYPVKVMRWIRHLIFTLHAERRDVQLAIAELEPKVAALSEIIGDAIK*
Ga0116108_10038996F003942GGAGMLGRRLNPTIHRYEDVELIEVHSEYLECRFLVAKDEWETGQPLLNLFSPLDGNVLGFPHYRLHRDNISAAGPKFPDGTTVQPGMAEAIEVQRQAGHALYADHLSAMLYGTGPNPARS*
Ga0116108_10038997F003389AGAAGGMQITVWSVAADDDNGTYSSVHETELAAYRRLIELTVDSDDKDQVAKAEAFIEEEDLDGLDEWIHAEVIEPLNTYSVDQHKLNVSAASDPDPAEENQHITRRELASVLHGLRLMQEQWEPQMHGCTSIGLHDPLELSEPNSCDHFCDGEDSPLSTTEIDDLCERLNTGICN*
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