NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116214_1000231

Scaffold Ga0116214_1000231


Overview

Basic Information
Taxon OID3300009520 Open in IMG/M
Scaffold IDGa0116214_1000231 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22927
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025342Metagenome / Metatranscriptome202Y
F029197Metagenome / Metatranscriptome189Y
F086999Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0116214_10002311F029197N/AGDWFGELRDDNHAKPPGDGHAEPDGTDDPWPEILAQADARVEAPGEAAVMPAEVMTTCLETGPEQPAITTSPASAKPLTAMQRNRPRPLEVTQCSMCGIALPLGLLVPDGGQACADIRWYCKDAMSCTERWTTARPPGRAQTPTAPGNAFAGAGEAVPDRASAERLGSMFEAAQPAV*
Ga0116214_100023120F025342AGGAGGVNRWEATSPYEWSGAWEGRLQIACGYGTKTDVCGHLHGSSTEAERCAHELAARLNSKPTPFDSRLPHRMPSDYYLG*
Ga0116214_10002319F086999N/ALFLTSRRSQVTRSTLAIGAGTSLVFGVVMYAVAPLGLTNDATDPWLPGSTADPLVALAWILLIGGPAAAATLAAWRGRGPGGTPLPRNVSFGQGIAAGVPANGTAAMFVSALGTGTTALMLRSAWLLHWLNHGHQLTAIATYRYETNAAGGAAT*
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