NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116214_1096209

Scaffold Ga0116214_1096209


Overview

Basic Information
Taxon OID3300009520 Open in IMG/M
Scaffold IDGa0116214_1096209 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1088
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005213Metagenome / Metatranscriptome408N
F036729Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0116214_10962093F005213GAGMEPERDAQEELSSMASSATKMANEPEQTGEERQPDVQLQDVLFSALVTSVCYWTTIFLLAIVGTYLIDWWLTHPGPYAAPANDPWGITTPPWLILPLAPIGVVGSLGHAVWCALRGQRTWKMLITAATLVAVMGCRKLLEIYLAPM*
Ga0116214_10962094F036729GAGGMIQHSENSRREITNAEAGVVGAVLGFGLIALLLYLAVERYHIRKEQLAEAGLYLFVIAAA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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