Basic Information | |
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Taxon OID | 3300009521 Open in IMG/M |
Scaffold ID | Ga0116222_1144452 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1024 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany: Weissenstadt | |||||||
Coordinates | Lat. (o) | 50.1318 | Long. (o) | 11.881 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001473 | Metagenome / Metatranscriptome | 688 | Y |
F005213 | Metagenome / Metatranscriptome | 408 | N |
F019896 | Metagenome / Metatranscriptome | 227 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0116222_11444521 | F019896 | N/A | SRLKTYDAPIPVKITQCEPGVAEVGPGEARIGLIALHLPPVNPDAKKTQPTVLKILFPIDRAGNLTATLVL* |
Ga0116222_11444522 | F001473 | GAG | MESEYQTVGQMYERLRLMIRQRNDTGFRLAVTDAVLEPRNPFEPASKRRPKSVVSITLILVLVLALIFLYFSLHHTT* |
Ga0116222_11444523 | F005213 | N/A | MEPERDAQEELSGMASSATKMANEPEGAGEERQPDVQLQDVLFSALASSVCYWTTIFLLAIVGAYLIQWWLTHPGPYPAPANDPWGITTPPWLILPLAPIGVVGSLGHAVWCALQGQRKWKMLMTAASLVAVMGCGKVLEIYLAPM* |
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