NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116218_1003689

Scaffold Ga0116218_1003689


Overview

Basic Information
Taxon OID3300009522 Open in IMG/M
Scaffold IDGa0116218_1003689 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7765
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010178Metagenome / Metatranscriptome307Y
F021584Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0116218_10036893F021584GAGGMDPQIDDQFERQYFSYVLDRVVPASAVQDPNQLQILSDADFEWWWILALRADNRLKVLMKEAATGRDFISTTASAVAGAATFNGINIDLWAGTALATAAFPLAVPYIMPATRVYSLLFTDTSGGNNTVELVFSGFKLWPRPKVA*
Ga0116218_10036894F010178AGGGGGMVKQKSASRYHSQFDRCHEIAEREVGRPRLNLLRKNPIVAGQLEYLVQPVFDFYGVAVATAVTKQQLFAQPIGASYTPSGGAAFIKTLYHTNLVQPGMLDAPKKLLVKAVAIVVRSDVAGQDLASWIGLTLAQLTISGKDYWTSLVSKCPAGAGAFGFYQSTQTLAAGGTEMNLGANGWPSAQNVASITDPFPQIPGLDPMEPILGQLIEQNQNFAVILDPTISGAAAFSTIAAAPATQFVGTGINAHVYLEGVLARAIL*
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