NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116221_1018487

Scaffold Ga0116221_1018487


Overview

Basic Information
Taxon OID3300009523 Open in IMG/M
Scaffold IDGa0116221_1018487 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3723
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025048Metagenome203Y
F031889Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0116221_10184871F031889GGAGMLYGELPTVLLDSGEEARGIKVRVPNPPKLAILRLPTSQEMLDRLDQQKSIRRTLGRRKSQTEFVPNPKADLNLFNKIRLDKGLEFDEFEAGNAISKLTYNEVTDCERTGEEYRITLRTPFGDTVHLMRIPTQRDITIYRRTVVSATDLPHGQEELRYRIQPSVEIYDAVAASIQGYAASMKPADVPPHHKSAVVVDLVQAIDDLDPPMDPNS*
Ga0116221_10184874F025048N/AMLNDSPITDAIAATLAAIPELAAAMTVLDSGGNPVCRISPFHYRLGQEYRLAEVIYKMPAPSMIVAWDGTQGGNFNGQSIWKHRFKVYFRMGNAAGLTDPVGYEDLWSIVCNGVPTGSPVNIRYMQIYPGLDIMDTPGVAHALDEDLEDRFVGALVIPEIGDN*
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