NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116225_1154269

Scaffold Ga0116225_1154269


Overview

Basic Information
Taxon OID3300009524 Open in IMG/M
Scaffold IDGa0116225_1154269 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1047
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006905Metagenome / Metatranscriptome362Y
F014996Metagenome / Metatranscriptome258Y

Sequences

Protein IDFamilyRBSSequence
Ga0116225_11542691F014996N/AVTSIHADIDALKGLHEALVRFRYAQRGVAERGDGEIEMTRASLAAKASRWQARLEQHQAELEACRAGGGEDVPDCTAYARAVEQAGERLEHIRRWQQRVDQEAGEFGGTVSGFRDLLEADLPRAESQL
Ga0116225_11542693F006905N/AREQLQGIGNAMPAAAVGKAIDALRAVLAGVPEDFPDRNREINRFLPPLAASVHAIMRAQEVDIPYSSRVEHIASGGVARYPDIVKVSLDEIAAEFDGTCHRPGNE*
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