Basic Information | |
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Taxon OID | 3300009527 Open in IMG/M |
Scaffold ID | Ga0114942_1072952 Open in IMG/M |
Source Dataset Name | Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Lower Cold Creek |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1093 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Lower Cold Creek, Nevada | |||||||
Coordinates | Lat. (o) | 36.42 | Long. (o) | -115.74 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F068264 | Metagenome / Metatranscriptome | 125 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114942_10729522 | F068264 | GGA | MKLSEIKGEDVLQGKSWLLKPGADGEDDPEVSETVGFTQEDVGLFSAAVRIADGSEHLGLVVKSFPAGGDDVDIFIHTQYGWMNIHAPGFMRALGKYSHEIFPFDYFLANPWKGGRMPEPDKASSHGKTFRDTAVRIRQTPPTPKKK* |
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