Scaffold Ga0114920_10454177

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114920_10454177

Scaffold Ga0114920_10454177

Overview

Basic Information
Taxon OID	3300009528 Open in IMG/M
Scaffold ID	Ga0114920_10454177 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	873
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	South Pacific Ocean
Coordinates	Lat. (^o)	-44.283	Long. (^o)	-75.865	Alt. (m)		Depth (m)	3285
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F059607	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114920_104541772	F059607	AGG	LNLLDEEGRTTVKSFVIAKGNEDRVELKAVTQLKGKVLEDEGFTFGLWLLENASSPFLRGLARVMDEAEIRKKVGLGY*

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