NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115099_10643270

Scaffold Ga0115099_10643270


Overview

Basic Information
Taxon OID3300009543 Open in IMG/M
Scaffold IDGa0115099_10643270 Open in IMG/M
Source Dataset NameMarine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5600
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)36.6882Long. (o)-122.386Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041217Metagenome / Metatranscriptome160N
F059018Metagenome / Metatranscriptome134N
F070161Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0115099_106432703F059018GAGGVAVPKLKVSPALKAKLAEIDEMLEGAVERKMTDVARTVVLASPVDTGAFVNSWSFKDNLGGGRSKSSDNKPRGRDKGSERGKALNNLVNDIKKTVEVGSPGGSVREGIALQAGNYYFINRAPHAIEVEQKKQIVDKIIRQHGR*
Ga0115099_106432704F070161GAGGMSFNASDVLRLVQDFGEPLTLRKVTKTGSYDTSSGTVSGSETLDYSFTGYFYSLAEGTFDLNKTRKGSRVCVIAAKGLSVTPDDEDQILGYGDPVNIQTVRTIRSGGQPVCYLCEVFE*
Ga0115099_106432706F041217AGGAGMTPDYSLLPFQLNWVQLVKQEFKGYGTEWKRGDVFDWQQRSIPWQDVMSLFNRGLLMQEAPTESNQKVVVGDGLDELGPDELKVIVDNINTKVKLFTKTEREYNTKKCKASTVTKKQRGHIRTWRNSPWSDWEQA*
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