Scaffold Ga0115006_11692647

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115006_11692647

Scaffold Ga0115006_11692647

Overview

Basic Information
Taxon OID	3300009544 Open in IMG/M
Scaffold ID	Ga0115006_11692647 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	576
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean
Coordinates	Lat. (^o)	78.8697	Long. (^o)	8.1122	Alt. (m)		Depth (m)	10
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043419	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115006_116926471	F043419	N/A	STHYVGQTPGITELLGEGQPRYFYALKRTEDGTLYFAKIDQLKDVDTITINNPGASVDDFTEFEYGVDFFDGRLESDHSRPYDNLEWDQYRWDNKNAYYYVNENGELVVRINQAYKYDASQIVT*

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