NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105237_10172028

Scaffold Ga0105237_10172028


Overview

Basic Information
Taxon OID3300009545 Open in IMG/M
Scaffold IDGa0105237_10172028 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2166
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001889Metagenome / Metatranscriptome622Y
F004214Metagenome / Metatranscriptome448Y

Sequences

Protein IDFamilyRBSSequence
Ga0105237_101720282F004214AGGAMKLQIAALATIIAGAVAIPASASASTPQCTSGTYTGYCGTQANNGSPVLVMDNSKQRAAINNPVIGWTDSSTDPATDWFQLAYAGDNSLGVMFFWAPTGVNLNLCVADPGNGRVVLRVCNGSNWQRWVANATSGGFSTWTNRATHRILRANAKGAQLTTVTPPAVPTGNEEWKFSH*
Ga0105237_101720283F001889N/AMTPLNVKNAGDSPLEVTYSANPATAMTWLKVSPVEILPGASASIPVTLAVPPDAGSGENYVILTAGGAHFDVRFSVGVSPPAECVAAGYDSSQGTSSLGFLWLILLVVIVLVAFWVRRRLAGRE*
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