Scaffold Ga0116107

Basic Information
Taxon OID	3300009548 Open in IMG/M
Scaffold ID	Ga0116107_1000004 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009548 Open in IMG/M

Scaffold ID

Ga0116107_1000004 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	360992
Total Scaffold Genes	366 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	222 (60.66%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

360992

Total Scaffold Genes

366 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

222 (60.66%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)	1 to 1.25
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

1 to 1.25

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005808	Metagenome	389	Y
F014936	Metagenome / Metatranscriptome	258	Y
F038044	Metagenome	166	Y
F049365	Metagenome	146	Y
F075569	Metagenome	118	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0116107_1000004130	F049365	GGA	MNLEQVKREVKALGKSPITEKAYPITSDWVPLPDVLAILNRFEKHWKKYEDSKKGASEAKLITEIIGES*
Ga0116107_1000004144	F038044	GAG	LKLVGVSLLIFGVYDAKVYWYALTKGEGAFDFFGRELPARHRGVKIGFTSVLVFYFAVGTVMLIFG*
Ga0116107_1000004225	F005808	N/A	MVRKEIFGKSERKVLEAYLSGKRLKGYTTLFTRIRQLGLAEIIEGCEHDLELLRKLAKVIDL*
Ga0116107_1000004318	F014936	AGTAG	MSNRIFLCSCQKCGTRFDFTGNYEKFNEFLDSKNFTCPGGHTESRSPRAFVKLVTMSESKVILEWKPTVGRNYVDVLDSMTARIKGMQIDHLGSGLYIDRRTMKKYDYEEDAKGVRHYFEVLQQHIRNSA*
Ga0116107_1000004324	F075569	AGGA	MVKQTKIKGKLREHTAVIDSAAPLILGFVAYSVAAVSTFSIPQLTHVRLDPLEIALLTSVAGLLVIGLGYGSIVLLGGICSLNIAGLIGRLTKTKQVIRPKEEKLLHLGKALIAKSHLVYLPLVLFFTSIALGWDIYSADPSRTPSTTAGTRPSTLRLVLHSLNFLATPQRAIGVLFSLRLTPALVAITVISGLVPSIALPYFRRFKIIGINSGPFHSTLLTAVFGSIIGLNIVVSLLGIFYKVLSAGAPTSYHYALIVLIGFSLHYSAGTYIGRGKAESIILRRLAKGRYDRNRIVVLDRTLNPHAETIKLGSLLRPQLD*
Ga0116107_100000486	F075569	AGGA	MVAQTEIKGKLRRHGMVTDSTAPLILGFGAYIVAAVSTFSIPQLTLVGLDPLGIALLTSIMGLLVIGLGYGSIVLLGGICSLNIAGLISRLTKTKQVIRPKEEEPLQLRKALIEKSHLVYLPLVLFFTSIALGWDIYIADPSRTTTSKPAMLRLVLRSLNFLATPQHATGVLFSLRLTPALVAITVISGLAPSIALPYFRRFKIIGINSGPFHSTLLTAVLGPIIGLNIVVSLLGIFYKVLSAGAPTSYHYALIVLIGFSLHYSAGTCIGRGKAESIILQRLANGHYDGNRIVVLDRTLNPNAEAIELGSLLRPQLED*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0116107_1000004

Overview

Ecosystem & Geography

Associated Families

Sequences