NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116137_1023568

Scaffold Ga0116137_1023568


Overview

Basic Information
Taxon OID3300009549 Open in IMG/M
Scaffold IDGa0116137_1023568 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2248
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1 to 1.25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040696Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0116137_10235681F040696N/AMDHHAGGIDIGDFEVETFVKSEAAGIDGGKIGVILEGFDLGQNASGFFNAKNGRESSFILSSEDSEDVPVSLEDVFVEEAYAAIADPHGIGGPVINVLPVEEIVLEFLFRDQIGGFAVELAEHANGAGVGLLSPFSFAVELKGLDHPVIPFCLHDTSPFSIMRDSPSQRRGV*
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