NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115013_10007699

Scaffold Ga0115013_10007699


Overview

Basic Information
Taxon OID3300009550 Open in IMG/M
Scaffold IDGa0115013_10007699 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5665
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (22.22%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-17.283Long. (o)2.9768Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024093Metagenome / Metatranscriptome207Y
F031892Metagenome / Metatranscriptome181Y
F033254Metagenome / Metatranscriptome178Y
F035957Metagenome / Metatranscriptome171Y
F066695Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0115013_1000769913F066695N/AMAELLTDDIITDALSNDGIMEEPDANWLLEYIESEYGGKLDNTTTWSDSKGLKIYSESTADSYDIYFCTYEDKPYVSQDGYYYEDHATWSEQAIEALCDNQNVWIESHIWDDMEYDFNHELEQWWQDVYEDKFNDKKDELIDSGDYYEEKQ*
Ga0115013_1000769915F031892N/AMKTDKFNEIVHELDTHAQETMNAKGPEYTVQDEDVLNNFKATAKKLGVDPLIVWYAYFDKQVSSVAAHVSNHDLNKAEPMISRFGDIINYAKLGYALFTERDKL*
Ga0115013_100076994F033254N/AMDILSMLNYNNMARKHTHEKLWSFSDEHVVDGMIYSHELDKWVTVEEYTEVYYGTL*
Ga0115013_100076996F035957N/AMPKYFDDLTLEQMFEYHDHTYMMADDNRAYENGRRQRDLIEDKVKAQGGWTKELVDLYNKYAPSGMFQKDYDFMQKYNK*
Ga0115013_100076999F024093N/AMAIIKQMNIVAEEIATDIIKQIDKQSDWQVGQFLPEDAESPLTNDTHSYLMRLVARHIANKLDVTTNKYYDE*
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