Scaffold Ga0115013_10069669

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115013_10069669

Scaffold Ga0115013_10069669

Overview

Basic Information
Taxon OID	3300009550 Open in IMG/M
Scaffold ID	Ga0115013_10069669 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1956
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	South Atlantic Ocean
Coordinates	Lat. (^o)	-17.283	Long. (^o)	2.9768	Alt. (m)		Depth (m)	30
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003769	Metagenome / Metatranscriptome	469	Y
F020898	Metagenome / Metatranscriptome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115013_100696691	F003769	AGGGGG	MQQLKTITVKTSNKVKSVHLDTLYAVIENCYNKLQIIEADCTGANYFCASANIFAQLQALYANNMHYKEYVSLQSVMDIFTDNITYYDEESLFTSVVENTAMQKVKLQDYTYLSN*
Ga0115013_100696693	F020898	GAGG	MQKVKFNTTVNMLTEKMLRVNNYTIQDATKNSCKSIYKNFNFNSKTKCADGDEMHFTAQMYNKYYTGRLVMLTVKNDNLISMYTLD*

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