NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105238_10003063

Scaffold Ga0105238_10003063


Overview

Basic Information
Taxon OID3300009551 Open in IMG/M
Scaffold IDGa0105238_10003063 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16661
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000621Metagenome981Y
F030041Metagenome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0105238_1000306313F000621GGAGGMPTTKHELLDWLMDVPEDAEIGTDGAGLALLAILGTNVQLLEIGHIPNADELYAEAINQAMIERLRRIDAAGGETDTGVIIVTFHGYISGVPSLFSADFNTAFIFKNTEQAEAFIKEFVDELHNPQILDCP*
Ga0105238_1000306314F030041AGGALVKRLGVQALIHYTNISKYELDKNEPPLAILLAYARLAEIPVEQIIDDEIELKI*

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