NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116138_1000046

Scaffold Ga0116138_1000046


Overview

Basic Information
Taxon OID3300009552 Open in IMG/M
Scaffold IDGa0116138_1000046 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)90116
Total Scaffold Genes75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (61.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1.5 to 1.75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008540Metagenome331Y
F013506Metagenome270Y
F027820Metagenome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0116138_10000461F013506GGAGGVNCQHLHFQFPAEPFQRWHVIEDRDLPRPLRFRHPRQSGEKPDPKVNFGIEELSARLEHAGVEYIRIALGHDAESFDLACCMVSDGLGGLEVPGDGVWYPVIPWVRDDGFYAVGMREPMPFRDACHLFGFDIPAARPSVPKRIKRDVARGRTSLFGELLETRELNPWDLLHT
Ga0116138_10000462F008540GGALIARETREENRRELARVLDQISRERASRLPAPPPVSLEAQFQMSIHRIREDVQRAKDVQTAHILRWLQS*
Ga0116138_100004648F027820AGGMLESINPGTTLSKRAARRLIQRAFVLTGRDKRVREHIRTTQLTTLWVLEDWNLAWTVYLHRGRLEVARRPGKHPDVTFSWPTAEEFFHQAERVGDSLVQVEILPALEHPRFFQPLLRGFFTALRHVLSNPVDDQGVSLL*
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