NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105249_11111136

Scaffold Ga0105249_11111136


Overview

Basic Information
Taxon OID3300009553 Open in IMG/M
Scaffold IDGa0105249_11111136 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)861
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003413Metagenome / Metatranscriptome488Y
F023229Metagenome / Metatranscriptome211N

Sequences

Protein IDFamilyRBSSequence
Ga0105249_111111361F003413N/AMVKDFSPEAQQAVNANTQAAFSNYRIRFIKPDVAVADALLTVRNVNGPDGTIIPVIPINFFFVAVRHGDQWLIQDGRAHFAAAPPSNMTKSSASQN*
Ga0105249_111111362F023229N/AMLVALFDAARSRTERYVVVASHEERKRWSSLESREPELNQVIVDVSREDFLVGNFDLKSLFSLSVGGFYSDDFVLWLGTEEMIGKTAAFQRMASVLEPIYTLFEMGMAFVESFRATANLQDSVGNFITHWEAVLGRTQLTSITFRWRTVRAWKDRVVIAERIESLPS*
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