NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105249_12314042

Scaffold Ga0105249_12314042


Overview

Basic Information
Taxon OID3300009553 Open in IMG/M
Scaffold IDGa0105249_12314042 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)610
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090843Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0105249_123140421F090843N/AALRNESRKAGFASALRRLPELYSRTADDAVVRRTLEDEKRNYSHANGVWRQIDNSSPLNLRRLSRQEIWEAVYFGHCQNANSAPMLPDQPGRDLRDHLCGETIEGELNYLMHGEYPVTIVTMFTPPNEFIAADALRGLIGRRDFNTRHTIVTEYLFPEQRRETKRLDRRIKQVKRTFTKRDNPEGAAALRSLRAVRDEVAGAR
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