NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0130025_1147823

Scaffold Ga0130025_1147823


Overview

Basic Information
Taxon OID3300009566 Open in IMG/M
Scaffold IDGa0130025_1147823 Open in IMG/M
Source Dataset NameMethanogenic o-xylene degrading microbial communities from aquifer solids in Pensacola, Florida - enrichment culture X8-AB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Colorado
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1136
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified → Aquifer Solids → Methanogenic O-Xylene Degrading Microbial Communities From Aquifer Solids In Pensacola, Florida - Enrichment Culture X8-Ab

Source Dataset Sampling Location
Location NamePensacola, Florida
CoordinatesLat. (o)30.703611Long. (o)-87.369167Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089758Metagenome108N
F094797Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0130025_11478232F094797AGAAGMDPGDLPDSETFLPTPSEARALSRDKGFETIWKGGILTGCHLVLKLQISFNAKGRLLYNGKPYSRSIWGWRPPKFIRLQGREAKEEPNSRNSHPEIYLTTRNGVELKLDACPCGGELVKDSCECLYCRDCGTVYDHHQ*
Ga0130025_11478233F089758GAGGMTTIQEQPGYPGDFGKAFESEDCLRKARKLCKKGNLQKDSDDKVYGTPPGLVSIVDLSHEMHRACSRLAKVLEDAGWFQVLEFPGYYFPPESKEGLE*

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