NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115101_1509899

Scaffold Ga0115101_1509899


Overview

Basic Information
Taxon OID3300009592 Open in IMG/M
Scaffold IDGa0115101_1509899 Open in IMG/M
Source Dataset NameMarine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2247
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)36.746Long. (o)-122.0257Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001145Metagenome / Metatranscriptome765Y
F001219Metagenome / Metatranscriptome744Y

Sequences

Protein IDFamilyRBSSequence
Ga0115101_15098993F001219N/AMNFPVTFFINASGLFDFDLTFPTEALLFLILAGVTTSVFLTPVGQQMEERSEFINYTLRKSTILLTFGYEKLTTCVGLLTEEIEEMNRQLKVVRSNTNSEFEKEISFVQNENMKILSALKGDLAIKSAYLFANVTEDINSLTDSFFTKKFQSQ*
Ga0115101_15098994F001145N/AMNLNLFSFFLNSEGSFFEFNTNILETNVINIFLLFALLFYANKVSFSGTLEERQKEIIQTIENAQKDVLNASNYYYLAEKGFTQSLFWLQSWKNVYEIEKNEIVNTKYKAVKSGLTETFTTTETLISNFETKSFVALQRYIIFITASKILRKFFFLNEKEQAKIIEVTVANLGGTRT*
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