NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105214_106484

Scaffold Ga0105214_106484


Overview

Basic Information
Taxon OID3300009595 Open in IMG/M
Scaffold IDGa0105214_106484 Open in IMG/M
Source Dataset NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3635_2500
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)748
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)1.4995Long. (o)-36.9978Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000161Metagenome / Metatranscriptome1845Y
F000930Metagenome / Metatranscriptome830Y
F032040Metagenome181N

Sequences

Protein IDFamilyRBSSequence
Ga0105214_1064841F000161AGAAGMKKFTIEVSHASPAQLTTIALDLKIMSNGWEKHGPRITINGQQVQAPSLRIQGTSGKQQAASRKRHKLAMFI*
Ga0105214_1064842F000930GAGGMYKVIRWKTDGTEEVWEAPKKPTLDQLYKLIGCSTVERQSGYDKDISNRTFDMWMDEESKCKAPEFIKKNERASAAWYEWQSRTGHQCIPGDFIAGNTVVCKKIKEDNEKIHNRS*
Ga0105214_1064843F032040N/ALIYPVCQDSIIFSYIAGTKTFCSITIANIKKLGYKFETQKEEI*
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