NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105214_112385

Scaffold Ga0105214_112385


Overview

Basic Information
Taxon OID3300009595 Open in IMG/M
Scaffold IDGa0105214_112385 Open in IMG/M
Source Dataset NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3635_2500
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)621
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)1.4995Long. (o)-36.9978Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092213Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0105214_1123851F092213GAGMNPLIRIVKKAEDLLRRVRIETAKTNQNSGIPIETYKNYCLTYADRINRLRGIPHWKKVEAREKVFKVYFDLQDFKGVERQTLKPNIEIPFSSLPENVTRYLVSADSFQGGLGFSAAQGLFLQDSHPKSNPYWKPTRPRPVYNVSKARYATIMEEYEWRRPLTLEEWVIDFEKQRQEHLYEMRQLRIPG
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