Scaffold Ga0105259_1094893

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105259_1094893

Scaffold Ga0105259_1094893

Overview

Basic Information
Taxon OID	3300009597 Open in IMG/M
Scaffold ID	Ga0105259_1094893 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	702
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8895	Long. (^o)	-106.9086	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004002	Metagenome / Metatranscriptome	457	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105259_10948931	F004002	N/A	KKITHGGQLGAPFSQMDCGAVLGNPCIRGQWSHIRHYEGTANPRDVIDMDFHSTTPKGVYDSLFCACLGCCDPETGAFIPPTLGPLVHKFQICNPDDHKVCGPMPRPAPANVIIWSGVGKVTPTDDVGGSRAAQQEWVIFRIYIEDRSEPGGGHPGGAVEPADIYCFQAWKTGIKTSKKPDFNTISTAFRAALGQANCDFVNALESGALPIGSLPSPTVNSLTADIQDCGPMH

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