NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114914_1008201

Scaffold Ga0114914_1008201


Overview

Basic Information
Taxon OID3300009601 Open in IMG/M
Scaffold IDGa0114914_1008201 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1948
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameOrkney Island (southeast)
CoordinatesLat. (o)-61.27Long. (o)-43.92Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001839Metagenome628Y
F021402Metagenome219N

Sequences

Protein IDFamilyRBSSequence
Ga0114914_10082011F021402AGGAGMITNNLTIDELDRFLQISSFCDSKMPKVKAKSLPTMYKVIENAIGVGEDAESIKNLDKYAATLKITLTSRQITIYDFVLLVMLDAKASDRELIYLRNFPHRLSLRKMKRMYLDWSHTKIGYEYEKALKNVCKYANRNLKKYI*
Ga0114914_10082013F001839GGAMKTFEKFHTDLLNNKVLSANEKVVYIICKSFENAPMGCRISHKYLMDRTKIKTRKTLIKILDRLTLFGMLSRKQIGHGTCHYVFDKETMQEYTQHNINKRRKISRSKKKSNPQINQQNTNVIHMVKKES*
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Institute for Fundamental Biomedical Research
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