NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114911_1045982

Scaffold Ga0114911_1045982


Overview

Basic Information
Taxon OID3300009603 Open in IMG/M
Scaffold IDGa0114911_1045982 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1368
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C198(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.49Long. (o)7.9Alt. (m)Depth (m)2455
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006447Metagenome / Metatranscriptome373Y
F043620Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0114911_10459821F006447N/AHVSTVVVLAIVVSAAAVSVGLYFAIKDVASSTYNWPEPAEYQVTEAGLQTMGKKNENYPDGTESQTLSIRLADGARISNLSISGTDLGRAGIARALDISPLTQAVTGSTAYLFVGNLTMTGSAFPTLKMEQSHVGTLTTGLLCDGHTMAATITNTIPDQVLTSKRLSSVYTVADSIVDRIQIHITGTSGAYIDQLTLSDVQAWNGEAYFSRLKVGNLTFNNTSQIGDGSGVDSASCYFDSSVLARNISNTIQDKPIKVQ*
Ga0114911_10459822F043620GGTGGMRLLALTVLTGMLVIIGIGLMLAWLYEVPRRLVRLAACYIGFHGRETWGVNPANQNSEPYCQDCQRFLAKAY*
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