NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114911_1062554

Scaffold Ga0114911_1062554


Overview

Basic Information
Taxon OID3300009603 Open in IMG/M
Scaffold IDGa0114911_1062554 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1134
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.49Long. (o)7.9Alt. (m)Depth (m)2455
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012859Metagenome276Y
F024528Metagenome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0114911_10625542F012859AGGAMVRNRRGLAPWSLSREAGIESATVDGTIEIPQYVQPVLDTGFVDEKGDWKGAKSNDKDFIAFHTDLGIANGGHIITPNANPDGTWPIDMTGYNDLQLAIKPTNGGNYAIQAIMGPDSSKYANLDPVNAASFIRGNIEGTATTMSSFTNVLADAADSLTADVWNIFYIRTVLKNQKLLQFKITNDSGGSSDIETAFMRLV*
Ga0114911_10625543F024528GAGGMPKKKLTKAQVKRKMKTCSNAMYDMILDKMGHANSDVPFSTPKLLEMNKIMQNATKRMK*

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