Scaffold Ga0105347_1005675

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105347_1005675

Scaffold Ga0105347_1005675

Overview

Basic Information
Taxon OID	3300009609 Open in IMG/M
Scaffold ID	Ga0105347_1005675 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4502
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9223	Long. (^o)	-106.9517	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026217	Metagenome	198	Y
F050961	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105347_10056754	F026217	AGGA	MKLDVQASASPLDLLRLDAEKSENRITEHPVWKAALDGTLPKPRLKRLLVAFYPVVAGPGRYAFAAKVSQIDAQDGKELFLQLHESLKNPAADPDTGWKKVLLALGASERELAVEPSAEAADLVDVLREHGLRSGPVHAAVIAYMLEQHLPRLWRALAEALQKHYGVKAGAVEHLRFEAGRAAKVEKWVGHLVDKYVAGADPYTVFEARRSARETIWAWTALTETA*
Ga0105347_10056755	F050961	GGA	MKKTMPPKGMPWSAPVLVRKDGKKLAVELPPQVAADLKAGPGDVLNFTKLPDGEIQIWVVKKGGYASLKDMK*

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