NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105347_1227314

Scaffold Ga0105347_1227314


Overview

Basic Information
Taxon OID3300009609 Open in IMG/M
Scaffold IDGa0105347_1227314 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)759
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9223Long. (o)-106.9517Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003172Metagenome / Metatranscriptome503Y

Sequences

Protein IDFamilyRBSSequence
Ga0105347_12273142F003172AGGAGMPETNKREAHGHKREAGSEVRVVVEVDGNPVGFLELDVDRLWPLVNHRTRDRAPVEWIDRSRFDSILRAAVVKRLISRLEQDLYRTLGDEIVKAQLDVESFMLKAETAAKAFGRSKSEIDALVEESNVSTMDFYTFFWDYLLDERDNVDLK

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