Scaffold Ga0116104_1004442

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116104_1004442

Scaffold Ga0116104_1004442

Overview

Basic Information
Taxon OID	3300009614 Open in IMG/M
Scaffold ID	Ga0116104_1004442 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_150
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5442
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)		Depth (m)	1.5 to 1.75
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026941	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116104_10044422	F026941	AGGA	MKVDLFAELFLWNRNVDGLIRVLQRLDRFSIVGKQERKAYEVRLEEIRAGLNAQFAEAIAKRGRDDEIRLRCQRTAWEVKKTLSDGSSRLQ*

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