NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116111_1020142

Scaffold Ga0116111_1020142


Overview

Basic Information
Taxon OID3300009616 Open in IMG/M
Scaffold IDGa0116111_1020142 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2355
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1 to 1.25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017520Metagenome / Metatranscriptome240Y
F056137Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0116111_10201422F056137N/AVNTTPENIRMSTKPAPPPPAQRAAGQAPKPGLASCAGQYEGRWEHVSGMGGMKVVFRSGKATITEGLGGEMPFDCFTGDGKVVFYKAGSFTPFSYDFDINNDGTLQTPLGAIKKMGN*
Ga0116111_10201423F017520GGAGGMRIFSLRCLFLAVPMASVFAQTPALQMNIVYVCTDGQSFKVFSCDNTTGACDYQNYKKGQAYQRGEALRVQLVALLPAKCHAQTPAEAQADPHRGEIPPAPSPFKARASAGSNGSGSTAAVNSQTSGPGGFKVGDTVRVLIDGWQEAKIIQVHGRSYVVHLQNGIDVSKLWPFEVRRLGKLTAEDHAAGQYDLHDRVQVLVNGKWMEGEIRGQNLNMYDIKGAGSRYGLRL*
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