NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116111_1072994

Scaffold Ga0116111_1072994


Overview

Basic Information
Taxon OID3300009616 Open in IMG/M
Scaffold IDGa0116111_1072994 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)922
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1 to 1.25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021887Metagenome217Y
F042085Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0116111_10729941F042085AGGAMPPHDEEFRTALRNILERSGLSMRALSAAMGRDPGYIASLLDPSRPSRARPTPADMIRASDATGIAFFELLETLWGIKGSRLADELGRL
Ga0116111_10729942F021887N/AMEDAVETRAEAGFPRRLARVDILPALPLRPLIAEYTATFGSTWAPVTRRKHADDFARLVDYLEAHELPVTTESLDFMTLVDYVTDLRLRSKVSGVWRGAPDALARSLLSGPVQTLSANSVNAYMRPLRSLAIWLVDEGILSVNPFRRSRRRAALNPLLPSEETPTKSATLDDLHALERGCAGDEPLEL
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