Scaffold Ga0105236_1000140

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105236_1000140

Scaffold Ga0105236_1000140

Overview

Basic Information
Taxon OID	3300009619 Open in IMG/M
Scaffold ID	Ga0105236_1000140 Open in IMG/M
Source Dataset Name	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8578
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (47.83%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location Name	Southern Atlantic ocean
Coordinates	Lat. (^o)	9.7046	Long. (^o)	-55.3027	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F057678	Metagenome / Metatranscriptome	136	N
F105900	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105236_100014013	F057678	N/A	LVQLKKYKEMVEYEVNDRVVFGYNNVNEVAVVTNVRRHKNNITGYDIRSEKGSGYIIVQVDANLTTRQYNKRVEYPLINSKLTAAWIGSDSDTNLFAKEGVGHTRQNFSKSMPIYLDGESGGGIQHFEKHNDLLFPTQGPRSF*
Ga0105236_100014016	F105900	N/A	MGRVNNAFAYDKKRSKRMGKLYNTIDFNVNDKISADLFAKVPEKPVVGELEIGGKSFKVTYQEIDAMLSTLTEAKRTVESKYRLGLMNK*

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