NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105236_1003112

Scaffold Ga0105236_1003112


Overview

Basic Information
Taxon OID3300009619 Open in IMG/M
Scaffold IDGa0105236_1003112 Open in IMG/M
Source Dataset NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1663
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)9.7046Long. (o)-55.3027Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039681Metagenome163Y
F044724Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0105236_10031122F039681AGGMATSTGFEIGDPTKLRIKPTYNVGDYGHDVSLPLLLAQSTNLVTLTPSTSSFHQTEHDSALPIDEVLSFISESDKCELLHNGNDTDFDKTWLIQSDMSFFSYKIALSFGIGMKVSAYTSGNITAESIRLTLTELGDGVGDIVIADLTIPTGASALSATGEQIIMFHADILQKIKFTNNRPVTMRIRTVSSKSGTATYQIGMCPVYPMISTAVPKQWLLSQVEIHAHASLDHAFPIWRDSDNDQRLDYSGCSPDGCNSALGEMGTV*
Ga0105236_10031123F044724N/AQSYLTKCIIESNSINLLPKVFQVPPIMGGLGTFTSSLTPILDAVECNTPLQLGATQQFRIYGQNFIANTVANRLGLGLHYSESTPTMKEKFYDMPTNETSSGTAATSVAGENVTINDGVFLEDIIPTVVSGVVTASESYIGYMSVTSNDFGNSMPLNVPVQPISTALGTTTSVGIAKNPHYTNIHMPMKSSCLISHSYVQDEALTATGAFTITYGYTKS*
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