NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116116_1041699

Scaffold Ga0116116_1041699


Overview

Basic Information
Taxon OID3300009621 Open in IMG/M
Scaffold IDGa0116116_1041699 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1438
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1.5 to 1.75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062371Metagenome / Metatranscriptome130N
F100212Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0116116_10416991F062371AGGAGGMSELDELQVGAATPAPEATPGAAQLQPTLAEMPLEDIVKMPENEVRAKLAAEMIDAANAVKSPREGVDYNIPLSDSQKLLISRIQIKKLDLAKQKADIEANEAKVDAYFHGQLVKIGQDNKIDMAKFVLSEDLEIKPMPEQPV
Ga0116116_10416992F100212GGAVFRQVFKISGCPLVVKFPLEGEIADGVQHSASEVNRVKRLSKIKELVPHLPKIHYHDRKNGVLIMQFYPRPRNDAETVEMLGKVIKKLVSRIARVRMSDIHADNVRKRRGDWTSAVFTDLGY*
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