Scaffold Ga0105173_1009462

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105173_1009462

Scaffold Ga0105173_1009462

Overview

Basic Information
Taxon OID	3300009622 Open in IMG/M
Scaffold ID	Ga0105173_1009462 Open in IMG/M
Source Dataset Name	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1344
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location Name	Southern Atlantic ocean
Coordinates	Lat. (^o)	-24.9939	Long. (^o)	-35.9974	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065114	Metagenome	128	N
F075333	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105173_10094621	F065114	N/A	LRGDRNAVMPSLGHGNGLSYRERETPESVSIGGLGCFGIVGAVGVPALWTAMKRLMPSPLNLSLYNPESLMSIFGVSERTEVSTESALQGCFVVKHKTQRLEDLTGDGYEKE*
Ga0105173_10094622	F075333	AGGAG	MKKNSMRYLEGLVERGVRKHLPALKHFRYRERGIESIVNGVVPTEHEDLMTVTKTARWLTTRAPEEYVYGEMVDIDNAIASNIAQYLTDYAKSYIGKVA*

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