NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116133_1000048

Scaffold Ga0116133_1000048


Overview

Basic Information
Taxon OID3300009623 Open in IMG/M
Scaffold IDGa0116133_1000048 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33721
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (52.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000482Metagenome / Metatranscriptome1089Y
F001412Metagenome / Metatranscriptome701Y
F007808Metagenome / Metatranscriptome344Y

Sequences

Protein IDFamilyRBSSequence
Ga0116133_100004814F000482N/AMQFSRSHLAIALGSSGLLVLVFLGYLYWLSSQGPVLARSNERDTLTQMPVSITMNPFRDRTIERTANSFIAAMRDGNCRQLLAVWEKDYRRKRADFLCNSEAQHPLISWNLVDWEDAPPLVILHYKGQRYSTPSQDATYKDLFSITEEKKDSGWTVTKYDAFY*
Ga0116133_100004818F001412AGGMKLNNLAKTVVLGLAVLLASSAFASNKSTVQLHESFEVNGQQLSPGEYQVRWDGTGSSVEVSFMQGRKEIAKAWAKVVPLDKAYDYDSAVVQHDGGKATVSEIRFAGKKYSLALGANEKAEMSAGAGK*
Ga0116133_100004827F007808GAGGMFYSIWLLAAALAGWAAGEIAGDGGFGTLADVLLGITGAFVVRWSVENIGISVNNVYLLLFSIWGAAAFPAVLRIALRRHHRAKARSRLESD*
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