Scaffold Ga0116133_1001043

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116133_1001043

Scaffold Ga0116133_1001043

Overview

Basic Information
Taxon OID	3300009623 Open in IMG/M
Scaffold ID	Ga0116133_1001043 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8282
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)		Depth (m)	.1 to .2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F077901	Metagenome / Metatranscriptome	117	Y
F085937	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116133_10010431	F085937	AGGAG	MPRRWKPPKEDRTDAEAIRRKKELAEKLAFAVEYGTEEEFVATVKKFKPDVGKEELKAWITRFHDARRETRGL*
Ga0116133_10010432	F077901	AGG	MAYEVFKRTGARVETPTLSITPDGRMTINAAAVRIARDSRITSVLLLWDGSSHRLALKATQRGDKNSYALSIVAASHSGSLRAKSFLGHIGWKAHKRETMPITWNEKERMFEATLPPERLESLKRSGAN*

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