NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116114_1000219

Scaffold Ga0116114_1000219


Overview

Basic Information
Taxon OID3300009630 Open in IMG/M
Scaffold IDGa0116114_1000219 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40935
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (55.10%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).4 to .5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002261Metagenome / Metatranscriptome577Y
F003186Metagenome / Metatranscriptome502N
F020297Metagenome / Metatranscriptome224Y
F021908Metagenome / Metatranscriptome216Y
F023143Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0116114_10002192F021908N/ALDGCPACRADWKAIDVSHGPGCPQNLLEEAMDTPNGALVRRCFRILNAKSIGLTITLADITEEEFRVLELIEAERQEQLKNGYGGAQDRR*
Ga0116114_100021925F020297AGGVQTRKEKTMNFLQILQTILSVAPSGIQLTQEVVALVQAIEAAFTAGQTPASHQQAVASALGAHLAKQ*
Ga0116114_10002195F023143AGGAGMDWIFMQSPEGEVKEVEATAAALTPLMVAGWRQVPAPAATGPKPATPVEEKK*
Ga0116114_10002196F003186N/AVINPKTILGEWVTALQSCPDLVTAIGGNGSNIRAFMEGLATDNNLRLAILQMPPGSVLVAWNGTTPRRLTGGSLHFAHRFSIYLRAPEQDSTATYADLFWLLVSAVPTGAPSWESLLHFQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE*
Ga0116114_10002197F002261GGAMPNWPNIEALVDGVVLQTFGEPVVYQPVQAGAAQGSPFTVTAVRHLRVREESGAMANFEEISVNPSDFSNPPAKGDWVTAWGTQYVVTTVRQPDAYGMLNLALLQRS*
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